Bioinformatics and Computational Molecular Biology

Algorithms and Hardware

Papers

Shakha Gupta, “ Hardware Acceleration of Hidden Markov Models for Bioinformatics Applications,” Master's Project Report, Electrical and Computer Engineering Dept., Boise State University, 2004.

Scott F. Smith and James F. Frenzel, “ Bioinformatics Searches Using a Single-Chip Shared-Memory Multiprocessor,” Future Generation Computer Systems, in press.

Scott F. Smith, " Protein Family Classification Using Structural and Sequence Information," 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB ’04), pp. 168-174, ISBN 0-7803-8728-7.

Scott F. Smith, " A Scalable Coprocessor for Bioinformatic Sequence Alignments," Proceedings of the 2004 International Conference on VLSI (VLSI 2004), pp. 303-308, ISBN 1-932415-41-6.

Scott F. Smith, " An Asynchronous GALS Interface with Applications," Proceedings of the 2004 IEEE Workshop on Microelectronic Devices (WMED 2004), pp. 41-44, ISBN 0-7803-8369-9.

Scott F. Smith and James F. Frenzel, " Bioinformatics Application of a Scalable Supercomputer-on-chip Architecture," Proceedings of the 2003 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA '03), Volume 1, pp. 385-391, ISBN 1-892512-41-6.

Boise State University College of Engineering

Boise State University Department of Electrical and Computer Engineering

This page created by Dr. Scott F. Smith

This page was last updated on 08 November 2004.