Bioinformatics and Computational Molecular Biology Hardware

BLOSUM 62

 


Ala(A)   4
Arg(R)  -1   5
Asn(N)  -2   0   6
Asp(D)  -2  -2   1   6
Cys(C)   0  -3  -3  -3   9
Gln(Q)  -1   1   0   0  -3   5
Glu(E)  -1   0   0   2  -4   2   5
Gly(G)   0  -2   0  -1  -3  -2  -2   6
His(H)  -2   0   1  -1  -3   0   0  -2   8
Ile(I)  -1  -3  -3  -3  -1  -3  -3  -4  -3   4
Leu(L)  -1  -2  -3  -4  -1  -2  -3  -4  -3   2   4
Lys(K)  -1   2   0  -1  -3   1   1  -2  -1  -3  -2   5
Met(M)  -1  -1  -2  -3  -1   0  -2  -3  -2   1   2  -1   5
Phe(F)  -2  -3  -3  -3  -2  -3  -3  -3  -1   0   0  -3   0   6
Pro(P)  -1  -2  -2  -1  -3  -1  -1  -2  -2  -3  -3  -1  -2  -4   7
Ser(S)   1  -1   1   0  -1   0   0   0  -1  -2  -2   0  -1  -2  -1   4
Thr(T)   0  -1   0  -1  -1  -1  -1  -2  -2  -1  -1  -1  -1  -2  -1   1   5
Trp(W)  -3  -3  -4  -4  -2  -2  -3  -2  -2  -3  -2  -3  -1   1  -4  -3  -2   11
Tyr(Y)  -2  -2  -2  -3  -2  -1  -2  -3   2  -1  -1  -2  -1   3  -3  -2  -2   2   7
Val(V)   0  -3  -3  -3  -1  -2  -2  -3  -3   3   1  -2   1  -1  -2  -2   0  -3  -1   4
        Ala Arg Asn Asp Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val
        (A) (R) (N) (D) (C) (Q) (E) (G) (H) (I) (L) (K) (M) (F) (P) (S) (T) (W) (Y) (V)

Substitution matrices are symmetric, so the upper-right portion of the matrix (not shown) mirrors the lower-left.

Maximum value = 11 (W-W), minimum value = -4 (many)

 

Boise State University College of Engineering

Boise State University Department of Electrical and Computer Engineering

This page created by Dr. Scott F. Smith

This page was last updated on 03 February 2004.