Bioinformatics and Computational Molecular Biology Hardware
PAM 250
Ala(A) 2
Cys(C) -2 12
Asp(D) 0 -5 4
Glu(E) 0 -5 3 4
Phe(F) -4 -4 -6 -5 9
Gly(G) 1 -3 1 0 -5 5
His(H) -1 -3 1 1 -2 -2 6
Ile(I) -1 -2 -2 -2 1 -3 -2 5
Lys(K) -1 -5 0 0 -5 -2 0 -2 5
Leu(L) -2 -6 -4 -3 2 -4 -2 2 -3 6
Met(M) -1 -5 -3 -2 0 -3 -2 2 0 4 6
Asn(N) 0 -4 2 1 -4 0 2 -2 1 -3 -2 2
Pro(P) 1 -3 -1 -1 -5 -1 0 -2 -1 -3 -2 -1 6
Gln(Q) 0 -5 2 2 -5 -1 3 -2 1 -2 -1 1 0 4
Arg(R) -2 -4 -1 -1 -4 -3 2 -2 3 -3 0 0 0 1 6
Ser(S) 1 0 0 0 -3 1 -1 -1 0 -3 -2 1 1 -1 0 2
Thr(T) 1 -2 0 0 -3 0 -1 0 0 -2 -1 0 0 -1 -1 1 3
Val(V) 0 -2 -2 -2 -1 -1 -2 4 -2 2 2 -2 -1 -2 -2 -1 0 4
Trp(W) -6 -8 -7 -7 0 -7 -3 -5 -3 -2 -4 -4 -6 -5 2 -2 -5 -6 17
Tyr(Y) -3 0 -4 -4 7 -5 0 -1 -4 -1 -2 -2 -5 -4 -4 -3 -3 -2 0 10
Ala Cys Asp Glu Phe Gly His Ile Lys Leu Met Asn Pro Gln Arg Ser Thr Val Trp Tyr
(A) (C) (D) (E) (F) (G) (H) (I) (K) (L) (M) (N) (P) (Q) (R) (S) (T) (V) (W) (Y)
Substitution matrices are symmetric, so the upper-right portion of the matrix (not shown) mirrors the lower-left.
Maximum value = 17 (W-W), minimum value = -7 (W-D, W-E, W-G)
Boise State University College of Engineering
Boise State University Department of Electrical and Computer Engineering
This page created by Dr. Scott F. Smith
This page was last updated on 03 February 2004.